Scaffold Ga0211510_1042722

Overview

Basic Information

• Taxon OID: 3300020336
• Scaffold ID: Ga0211510_1042722
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1127
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_023
• Coordinates
  • Lat. (^o): 42.1659
  • Long. (^o): 17.7285
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F007531	Metagenome / Metatranscriptome	349	Y
F037814	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211510_10427221	F000302	AGGAG	MVETMTQETKDRIAQMERQKIELENQLELLGYSGNLVRMHQIEEEIYEIEDTIRKLLP
Ga0211510_10427222	F007531	AGGAG	MQRIQRLILDFTKDTGLTDRREMTHGTLYVKLHEEKECDTFHKVLRTFFKEQIDNEGGVNMYAVGDEFAFDFVPADREAPVFADEEENGVWSEFAEEEMFNNMPDEVDTIMNLEAESKRG
Ga0211510_10427223	F037814	AGGGGG	MEISLAISIAMLLVIIISFGYMLKELKECQKIIKKMQRRSRKYIREVVSND