Scaffold Ga0211510_1029072

Overview

Basic Information

• Taxon OID: 3300020336
• Scaffold ID: Ga0211510_1029072
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1421
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_023
• Coordinates
  • Lat. (^o): 42.1659
  • Long. (^o): 17.7285
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F015102	Metagenome / Metatranscriptome	257	Y
F027536	Metagenome	194	Y
F029123	Metagenome	189	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211510_10290721	F015102	GGA	MGSDEDAEDKNAPFDDVTHWVGNLPRKDTDSTKRTTKRNTRRETKSNFLRKKLGLEKK
Ga0211510_10290722	F027536	AGGAG	MRVSKVIPIDRVLNECRRRADDAWWDGKDEEAKLHEQEVKLYEQDKEEGVLWVPNF
Ga0211510_10290723	F029123	AGGAG	MSYEVWFGQNGTWFGYHSFKHHWDAKRYEERYQTVFPNLTVELRSREHAS
Ga0211510_10290724	F006217	AGGA	MIELLLSVIEEPNQFHKYCMEKHEHWTGRAACVQELRHAQRKMEVEELRQFLKENPHYRYPGMALPNGRIKPLDVCWGSDKTYYIGSDKVKRSKC
Ga0211510_10290725	F103094	AGGA	MTKKAPEKLNIEVSLSSENSCYVSVKDYTIYVEVSKATNDKPYISFWKKGWQDDRAVTVS