Scaffold Ga0211510_1016346

Overview

Basic Information

• Taxon OID: 3300020336
• Scaffold ID: Ga0211510_1016346
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1976
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_023
• Coordinates
  • Lat. (^o): 42.1659
  • Long. (^o): 17.7285
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F005578	Metagenome / Metatranscriptome	396	Y
F011629	Metagenome / Metatranscriptome	289	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211510_10163462	F003769	AGGGGG	MQQLKTLTVKTSNKVESVHMDTLYVVINNCFNNLNVVEADCTSASYYINSANIFAQLQMLYCENESNDYVSLQSVMEVFANNITYYDESSLFTQVVKNTAMQNVKLENYVYLSN
Ga0211510_10163463	F011629	GAGG	MLNTTQVKELVKQRFGGSLKQAYLNKCYSNKQEIADKRNMAFAVDGDAYKGVDLTALAQEIGCKRVKLHTAFLRGMQSGAWLRLQHVSYNK
Ga0211510_10163464	F005578	GAGG	MQKNINTRELKHLCNFLTHAMNYKVELVSDEDFACDEDGGANIYDWVSATEELCMRTQCVLDNYFTHKDETLATAFETAIDYRYDDDCINEGISEHFFDYCKKHNILDFYFKQADAHDYDGEDANMRMYKS