NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211510_1013484

Scaffold Ga0211510_1013484


Overview

Basic Information
Taxon OID3300020336 Open in IMG/M
Scaffold IDGa0211510_1013484 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2197
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_023
CoordinatesLat. (o)42.1659Long. (o)17.7285Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F007722Metagenome / Metatranscriptome346Y
F013311Metagenome / Metatranscriptome272Y

Sequences

Protein IDFamilyRBSSequence
Ga0211510_10134843F001611AGGAGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYINNDLLTTGSQRNRVLVRFTNDTAATRTIRCGIFIG
Ga0211510_10134844F013311AGGAGGMAFLGDFGKFFGLGSSKEVLGDAGAATAMAFGLPPESGRQVGRTIARATDNLAGDGSNISPLSTADQALEQSAVPVSQAGAPRPMETANVGLTGTTQQAGLGSLIPGLIGGARTVFPQIGKFIGTPAGSVGTGIATGVGINMFQGQQNFGTKTVLTQSRRNKARVRQLVNFMGIEGAAQFLSQAMNTNVMASDVVNLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRPAIRRASSTTLIKN
Ga0211510_10134845F007722N/ADTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAMKQQSNVHDIKKNNLGG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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