Scaffold Ga0211510_1013329

Overview

Basic Information

• Taxon OID: 3300020336
• Scaffold ID: Ga0211510_1013329
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2210
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_023
• Coordinates
  • Lat. (^o): 42.1659
  • Long. (^o): 17.7285
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F009559	Metagenome	316	Y
F021299	Metagenome / Metatranscriptome	219	N
F039389	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211510_10133291	F021299	N/A	RVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMTPSSDKLGG
Ga0211510_10133292	F039389	AGGAGG	LAFLGDLGKVFGLGSSKQVLGDVGSFIGSGFGIEGAGRRAGEALAGATSSLSTADQPLEQSAVPTGDPKQGRAQETSRTGSTTTNIIDVSRGNGMENQANLGLLTPLLQQAGKFLSSRTGQIATGVGTGALFAGGGQDGRMKPVLTQSRRNKARVRQLVNFMGIEGAANFLAQSSGENVSANDVVMLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRASPMRKASSTTLIKN
Ga0211510_10133293	F001611	AGGAG	MPLVQKTLTLAAGATSDNILANTNYEFIDGNVRLRVASAVDTPGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYINNDLLTTGSQRNRVLVRFTNDTAATRTIRCGVFIG
Ga0211510_10133295	F009559	N/A	MNQVLLYASVILASLSFFLCLYACARVGKLLNSVKGLEWDTVATLTGDIG