Scaffold Ga0211510_1004741

Overview

Basic Information

• Taxon OID: 3300020336
• Scaffold ID: Ga0211510_1004741
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3848
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_023
• Coordinates
  • Lat. (^o): 42.1659
  • Long. (^o): 17.7285
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022423	Metagenome / Metatranscriptome	214	Y
F038249	Metagenome / Metatranscriptome	166	N
F040134	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211510_10047414	F040134	N/A	MKENLVKSEWKLQSIEYSGIGNKPHFILMNDQGDFKMEPIDNGIHNLRKLLNLES
Ga0211510_10047416	F022423	N/A	MAQDLTFITTTIQTMTESVQNTETLHKIIGTANQYAKTMKFSNDKTQWSDEQLDKYLAMIEKLVDMPVEYTQDDFDKLSLEEKLDAAGLSATDITPGLQGAGDMLGGIVEDVQKQNKYRDDLKCPYCKAMVYDNRNSKKSDKSPDFTCSTNDPVVCGGHTGKWRKSWWLDNTDIPAEWNV
Ga0211510_10047418	F038249	AGGAGG	MIPESFRGEDIPAYIKSKTQLVAYIFTRYMGESPISNWEFVAELYCHRFGGIIHNLRQEGYKITTLPAKKRGLVHYYCTELPTKAAIS