NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211510_1004207

Scaffold Ga0211510_1004207


Overview

Basic Information
Taxon OID3300020336 Open in IMG/M
Scaffold IDGa0211510_1004207 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4085
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_023
CoordinatesLat. (o)42.1659Long. (o)17.7285Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032303Metagenome180N
F043609Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0211510_10042072F032303AGGMIKHIAEKEALDFASKQEHKDKWHKDFYYWKRHLLALKNWPWLKKFYKGGKWLGHFDEELNGVYWYNLQGDEMYDGFLISSKVGVGIKLGRWLEKNIKYKTNWSCCSKQYVKFNERLGFEIKSMDNIEEQEVFLLCRKKY
Ga0211510_10042075F043609GGAMTTDNQEFHNILKTVDFADISSFWKVPYKEILEEVKQIPKDKWRKPFDADYKREGLNDLESNIYYPGSKGDLIPAKGWRSVTALNETGDYRDQISKFTPVFNSENEYRNKLKEVKENSQWTDISHYLPTLKTFFEEKVSPYMYVGHIYVSALDAGGIVTEHNDIPEESRPMLESDRVHSFNVLNTFNLVLNHVKSCYSCFNGKILPAYDGAIRWTNTGKQHWVVNMNKETQYQIIWQGLYKKSFRKLVKEKYKYSYGNNRQS
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