Scaffold Ga0211690_1024296

Overview

Basic Information

• Taxon OID: 3300020335
• Scaffold ID: Ga0211690_1024296
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1528
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1906
  • Long. (^o): -58.2682
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003514	Metagenome / Metatranscriptome	482	Y
F004191	Metagenome / Metatranscriptome	449	Y
F007551	Metagenome / Metatranscriptome	349	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211690_10242962	F004191	GGAG	MNKFKEMMATLFAVLGVFALVGATGAVETDQWVLALALTVMGTCTMFLSIICQEKK
Ga0211690_10242963	F003514	AGGAG	MITPEQYNKLREEELILKAAKSGGASKSEMLHGSLFVTFTPGFVDVLSQNLKYVLEKLLDNTTVKMYNTTNNEYAYDFI
Ga0211690_10242966	F007551	AGGA	MQTWEEMMITKILTQAVEDAKYTGLSKFDLEHKIESINWIMGGDPQFKYYCKLLNIEPSYIQNKIKSYGDTRITSQQKVILKPIVEKLLKSKKYQDNWFAKHVEEKI