NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211690_1024296

Scaffold Ga0211690_1024296


Overview

Basic Information
Taxon OID3300020335 Open in IMG/M
Scaffold IDGa0211690_1024296 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1528
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1906Long. (o)-58.2682Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003514Metagenome / Metatranscriptome482Y
F004191Metagenome / Metatranscriptome449Y
F007551Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
Ga0211690_10242962F004191GGAGMNKFKEMMATLFAVLGVFALVGATGAVETDQWVLALALTVMGTCTMFLSIICQEKK
Ga0211690_10242963F003514AGGAGMITPEQYNKLREEELILKAAKSGGASKSEMLHGSLFVTFTPGFVDVLSQNLKYVLEKLLDNTTVKMYNTTNNEYAYDFI
Ga0211690_10242966F007551AGGAMQTWEEMMITKILTQAVEDAKYTGLSKFDLEHKIESINWIMGGDPQFKYYCKLLNIEPSYIQNKIKSYGDTRITSQQKVILKPIVEKLLKSKKYQDNWFAKHVEEKI

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