Scaffold Ga0211690_1007372

Overview

Basic Information

• Taxon OID: 3300020335
• Scaffold ID: Ga0211690_1007372
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3350
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1906
  • Long. (^o): -58.2682
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045129	Metagenome / Metatranscriptome	153	Y
F049660	Metagenome / Metatranscriptome	146	Y
F095485	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211690_10073721	F049660	N/A	MKAYSGKPRGRVNQGGATHKKDADKLNKNFGKNYNSIDFEMGEHLNEANYKDKSRPIGTLVVGSQRVDLTWSECNKIFTTLLDAQQIHRRKIQLGMFD
Ga0211690_10073722	F095485	N/A	MKASDLFKELGMGDEEMKEARNWVNYKHFSETIPDILSLNEYIDTVYKHAVTIDAKPHQWFSERYMTERYLQSDVSIGSDYVTNLEKRIEMILGKPSTQPDLKTQLHIHKFLELILTVVRKSKLALPKETLLFLNQIYKGNINT
Ga0211690_10073723	F045129	N/A	MSIHYIEEPYRQKIVDILSTDDTDEQKYMNLKLYLVGESYFKHFTSEPAWLTRDIIRDFN