Scaffold Ga0211690_1000559

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211690_1000559

Scaffold Ga0211690_1000559

Overview

Basic Information
Taxon OID	3300020335 Open in IMG/M
Scaffold ID	Ga0211690_1000559 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000768 (ERX556030-ERR599035)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16983
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (8.11%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_082
Coordinates	Lat. (^o)	-47.1906	Long. (^o)	-58.2682	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023952	Metagenome / Metatranscriptome	208	N
F061972	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211690_100055936	F061972	N/A	MNYQTFLFSQLFMNHIEDYNTQYQELEYDLIYNEVLKHKNLFINSNYNVDVRSEYDCILDYLLNEIK
Ga0211690_10005594	F023952	N/A	MIGSPIYNKSFWGKGACNNTVGWGIIYRPFAGCSAVPALLVLLQARADFYENVTCTTATLDELENII

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