NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211593_1030675

Scaffold Ga0211593_1030675


Overview

Basic Information
Taxon OID3300020334 Open in IMG/M
Scaffold IDGa0211593_1030675 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001121 (ERX555938-ERR599091)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1147
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.895Long. (o)-142.6228Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034211Metagenome175N
F052942Metagenome142Y
F067640Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0211593_10306753F034211AGGAGGMAYLTKDDLVIIPSASGANIQARVVDMQFRRFRRSWKDKATGETKSRWKSVPYAVCECFLGAPIGTEFVIPGYKLKNETKDGEKLLVLRNEYAAEFGGHWIEKMIEDSRAKRESA
Ga0211593_10306754F067640GGAGMIEVGCLLRNRFNDSVWLALDEIAESVLIINQKTNYKMWADKTHFEVIA
Ga0211593_10306755F052942GAGGMKVWVMQGIHEGDLFSSVHLTEKGCALACIADVLEFLGVEDEETALSAMNNHNAYRETDGEQAEPYE

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