Scaffold Ga0211593_1030675

Overview

Basic Information

• Taxon OID: 3300020334
• Scaffold ID: Ga0211593_1030675
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555938-ERR599091)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1147
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.895
  • Long. (^o): -142.6228
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034211	Metagenome	175	N
F052942	Metagenome	142	Y
F067640	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211593_10306753	F034211	AGGAGG	MAYLTKDDLVIIPSASGANIQARVVDMQFRRFRRSWKDKATGETKSRWKSVPYAVCECFLGAPIGTEFVIPGYKLKNETKDGEKLLVLRNEYAAEFGGHWIEKMIEDSRAKRESA
Ga0211593_10306754	F067640	GGAG	MIEVGCLLRNRFNDSVWLALDEIAESVLIINQKTNYKMWADKTHFEVIA
Ga0211593_10306755	F052942	GAGG	MKVWVMQGIHEGDLFSSVHLTEKGCALACIADVLEFLGVEDEETALSAMNNHNAYRETDGEQAEPYE