Scaffold Ga0211593_1000050

Overview

Basic Information

• Taxon OID: 3300020334
• Scaffold ID: Ga0211593_1000050
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555938-ERR599091)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 44043
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (63.04%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_125
• Coordinates
  • Lat. (^o): -8.895
  • Long. (^o): -142.6228
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025996	Metagenome	199	Y
F082531	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211593_100005010	F025996	AGGAGG	MMTPQLEMHIGELDKSIIALSKRKLKLLQEVNDINETISFLRQQQEDLSNV
Ga0211593_100005013	F082531	AGAAG	VNPLSELFMNDQDIEQFIKAFDDFMQHAETEIDAHQKWKEAEEYTNQFFEERAAELEVTVDYYMQEFVQ