NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211661_1142031

Scaffold Ga0211661_1142031


Overview

Basic Information
Taxon OID3300020333 Open in IMG/M
Scaffold IDGa0211661_1142031 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000959 (ERX556081-ERR598953)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)554
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9057Long. (o)-96.155Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012861Metagenome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0211661_11420311F012861GGAGMKTIDLNLKQYPEIKEKLKDLEEINFTPKEYHKIFEMAGFDLLSNSEMRSLILAFCEKLNPELSEREYKKIKSYHP

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