Scaffold Ga0211661_1030811

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211661_1030811

Scaffold Ga0211661_1030811

Overview

Basic Information
Taxon OID	3300020333 Open in IMG/M
Scaffold ID	Ga0211661_1030811 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX556081-ERR598953)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1517
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_100
Coordinates	Lat. (^o)	-12.9057	Long. (^o)	-96.155	Alt. (m)		Depth (m)	177
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009367	Metagenome / Metatranscriptome	319	Y
F051204	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211661_10308111	F051204	GAG	MKIKIHSKHVDEKLKAAVKVMCEFALARLGVSSRITKNLKLSVHFGHHISEGEAKVAKSANRYRPRDFKINLDHHRMEKDDYGRTLEDTEWGHRVLRTLAHELVHVEQYIRGDLT
Ga0211661_10308113	F009367	AGCAG	MKEVHSQLVDVVLLTHENGSTMLCRGGEDAVRRFWEIWPIVKAEFTGEKQLLQWIVADPPIQP

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