Scaffold Ga0211661_1030553

Overview

Basic Information

• Taxon OID: 3300020333
• Scaffold ID: Ga0211661_1030553
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX556081-ERR598953)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1525
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Pseudothioglobus → Candidatus Pseudothioglobus singularis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_100
• Coordinates
  • Lat. (^o): -12.9057
  • Long. (^o): -96.155
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084730	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211661_10305534	F084730	N/A	SNCTVAILDSVEPVFTVGYFSYLNCVTSGVYLHDASNCIYGYGTPKRALIFFK