Basic Information | |
---|---|
Taxon OID | 3300020332 Open in IMG/M |
Scaffold ID | Ga0211502_1016320 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000029 (ERX555956-ERR598975) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1553 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | TARA_034 | |||||||
Coordinates | Lat. (o) | 18.49 | Long. (o) | 39.8483 | Alt. (m) | Depth (m) | 60 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F027156 | Metagenome | 195 | Y |
F029745 | Metagenome | 187 | Y |
F040056 | Metagenome / Metatranscriptome | 162 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211502_10163204 | F029745 | AGGA | VASEAPRVGDLVRSLSLPTHAAGYIVGTEGIHVWVRFLDTDLEAGDSWDVYTRRDTLEVISRANSR |
Ga0211502_10163205 | F040056 | GGAGG | VQTHADLRIGMLVRWHGDDTEGADIDELGIVTQLPGEDWSGYYHIAWAITKNTTHHSPEMIEESLYQGQMEIMQ |
Ga0211502_10163206 | F027156 | GGAG | MIPKVGQLLRWYDNFTLDRDSPQHDVGIVKEVQFEGINFFDNDEYEYLVVVDWCKGPHHSLHDQQEWEESIRTNEIVVVE |
⦗Top⦘ |