NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211632_1048544

Scaffold Ga0211632_1048544


Overview

Basic Information
Taxon OID3300020329 Open in IMG/M
Scaffold IDGa0211632_1048544 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000678 (ERX555981-ERR599083)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)878
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_122
CoordinatesLat. (o)-8.978Long. (o)-139.2432Alt. (m)Depth (m)600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021857Metagenome / Metatranscriptome217Y
F035477Metagenome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0211632_10485442F035477GGAGMQNFKYFTEAKMARAHFQLIADIIAKLDISTVIKKEVASAFADGLGDTNPMFKRDAFMKATKMKHKGIPTEKDK
Ga0211632_10485443F021857GGAGGMTIIDKKVRVRSRFCAICDSQYRWQCTCPNNKVLADQVNKSFHAGKRYRGKRALEYCYETENKDAEL

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