Scaffold Ga0211632_1024697

Overview

Basic Information

• Taxon OID: 3300020329
• Scaffold ID: Ga0211632_1024697
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000678 (ERX555981-ERR599083)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1254
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_122
• Coordinates
  • Lat. (^o): -8.978
  • Long. (^o): -139.2432
  • Depth (m): 600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062154	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211632_10246972	F062154	AGGA	VGANGVKVLSVVNARPEQLVNSVANGVRAPSVVNARPEQLVNSVANGVRVPSVVNVRPEQAVSVDRSPVAAVVREDQVVLCGCSL