NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211567_1107735

Scaffold Ga0211567_1107735


Overview

Basic Information
Taxon OID3300020328 Open in IMG/M
Scaffold IDGa0211567_1107735 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001971 (ERX555937-ERR599015)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)578
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.1468Long. (o)-116.6821Alt. (m)Depth (m)375
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059064Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0211567_11077351F059064N/ATSTEAGYLDGVTSAIQTQMDTKSTKAFAIAQAVALG

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