Scaffold Ga0211567_1099810

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211567_1099810

Scaffold Ga0211567_1099810

Overview

Basic Information
Taxon OID	3300020328 Open in IMG/M
Scaffold ID	Ga0211567_1099810 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX555937-ERR599015)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	605
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_137
Coordinates	Lat. (^o)	14.1468	Long. (^o)	-116.6821	Alt. (m)		Depth (m)	375
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015796	Metagenome / Metatranscriptome	252	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211567_10998102	F015796	AGGA	MNKTQMKRYDDTRDRVLIREWFKLKGVVLEHGSKYGVDLEGKDYDIEISHLSFDRLWNQWKKENRFRIEIRKRNHYWDGIYNESNTTHFVQLNKSGHELLVYPQDLIMEYSNNEVELGYLRSKGFNLKERTFMSIPFNIGKDVIK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.