Scaffold Ga0211567_1087089

Overview

Basic Information

• Taxon OID: 3300020328
• Scaffold ID: Ga0211567_1087089
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001971 (ERX555937-ERR599015)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 655
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_137
• Coordinates
  • Lat. (^o): 14.1468
  • Long. (^o): -116.6821
  • Depth (m): 375

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001334	Metagenome / Metatranscriptome	720	Y
F003285	Metagenome / Metatranscriptome	496	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211567_10870891	F003285	AGCAG	MPEQESIHHLQTEIQTLKIKDEFRTKELDALMEKLSDTSSKLNALSENIGRLLAGQELHKASDNEVRDELKILHTRIGDLHDKCTEMIDKTETRVSSDISLLYNKVDSLEKWRWITIGIATAFAWLLTNIIPKFLDN
Ga0211567_10870892	F001334	N/A	QVNADDSIEQIMSGEWISKSRSTWRATDDEDNTIEIHNDGHDPELNGESWAVHTNTFAPKAFAFFCKQFITEIRPAELSYARTRIYPSPSN