Scaffold Ga0211573_1041738

Overview

Basic Information

• Taxon OID: 3300020327
• Scaffold ID: Ga0211573_1041738
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX556115-ERR599070)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1201
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_137
• Coordinates
  • Lat. (^o): 14.2016
  • Long. (^o): -116.696
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004908	Metagenome / Metatranscriptome	419	Y
F064626	Metagenome / Metatranscriptome	128	N
F099123	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211573_10417381	F099123	N/A	MDKYEINVWKDAELLSKEVVEFESNEKCYDYVMDKHYAPGTWTGSHQNKNGVTLNRPPLGIRITWAKRTKDNYIYKP
Ga0211573_10417383	F004908	AGG	MERQEHQLTKKIIDLHQVEDGAINPKTGLTEKPSWYVRFEDMSDRVLFRSKLLELLSMGFRKTVENFKAGKATTVQGGEARFWVVVFQDYEVRLQTKSQIMDIVTEGHRHREDDDNAKFERNGHDKITLE
Ga0211573_10417384	F064626	N/A	MKELRKVTEKIKKVLIDAERGNEEFPWIVDKLSLIKMYDMGLPIHMVLGLIDEFVEDVEERKRIKALEGFDEEHVRKVYDRVNVKWNDRNIN