NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211573_1031321

Scaffold Ga0211573_1031321


Overview

Basic Information
Taxon OID3300020327 Open in IMG/M
Scaffold IDGa0211573_1031321 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001964 (ERX556115-ERR599070)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1449
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.2016Long. (o)-116.696Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021787Metagenome217N
F024125Metagenome / Metatranscriptome207N
F054936Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0211573_10313211F021787N/AMTDMISCEEVFGVDADARSEFDVVCDEWLNESILAQDAEEDLVECEGCGEQWYAHQAGANGRIEWCQKCYKNDPYYV
Ga0211573_10313213F054936N/AMKKYYKTPLHPRPNGKSGSLGKVSDSWDDCDAMPHYTYSKGWWAETKRLVDESYARLVAKGFFDNTSDYWDKRRKTDPRCQGQK
Ga0211573_10313214F024125N/AMKEKIYEKTLDRFTGKVLTCDLCEAEDSKENEVREWGNPYDWGVICEECDCHET
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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