Scaffold Ga0211573_1017495

Overview

Basic Information

• Taxon OID: 3300020327
• Scaffold ID: Ga0211573_1017495
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX556115-ERR599070)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2095
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_137
• Coordinates
  • Lat. (^o): 14.2016
  • Long. (^o): -116.696
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007004	Metagenome / Metatranscriptome	360	Y
F010942	Metagenome / Metatranscriptome	297	Y
F101352	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211573_10174952	F010942	AGGA	MESNKVKFCDEHQSRASETQILGIRKDIEHLKYVINELEKECEFIKDHFTTKNGDRLDDVKVLHGRIEQRQQADLEFHENVRKKVSERFEKLDDRIRHLDRWKWATWGAFIIIGSLIGYFLPSPKLPIGGSLL
Ga0211573_10174953	F007004	GAG	VEIRDERDNMKNIILGFCLIVFVGCANSNAYERPTVRIVGEAQMTKLPNGNYEVTPRWIKDRFNAENSMLKQLEDCREDGK
Ga0211573_10174955	F101352	N/A	NITPDDKFAGVDVFKVDDNEYNNCKMGKKKYARWDKYVDVETDTGKKIVGYAKKYPNKSIIVQHDKTDHMLYLKKFVKGEE