Scaffold Ga0211573_1011449

Overview

Basic Information

• Taxon OID: 3300020327
• Scaffold ID: Ga0211573_1011449
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX556115-ERR599070)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2770
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_137
• Coordinates
  • Lat. (^o): 14.2016
  • Long. (^o): -116.696
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F040683	Metagenome	161	Y
F055789	Metagenome	138	N
F061266	Metagenome / Metatranscriptome	132	Y
F096041	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211573_101144911	F061266	N/A	MFGTKKEEEQKLKRFMVMCKGKKSNTFYHEKSFFTLADADAYANLVRRQEDEQGNIFYLFEQSKEYGNGEDKN
Ga0211573_101144912	F055789	N/A	MKKHTIIMSDPYLEKIAKEKHLHEYEKEITDAKKEIFALKQEIIHLKAEVKYERELRIKGTEYHPTDYHSRLRRMIEVVTNEKKLTDLFEIVDEAQTRLRIEK
Ga0211573_10114492	F096041	AGAAG	MKLNKNKEYIYVTRTMKINVPALHCDEAVDKVKMMKKNDLIPKELGTLYTRCRVRKSGDEYRL
Ga0211573_10114493	F013700	GAG	MNIDYKNLAYPFEELPDAPYTIVRILNECYNDYKDGNLGDGEHMASGMQVRGEFLKRIAQMGYDELKYKDIADTLEEDVSENNEHLYHKHYEPSEQEDE
Ga0211573_10114497	F040683	AGGAGG	MKKYRVWGYETQGYHIDLEANNKQDAHDKAMDIDREDWQIGNDGESTCFDINKKNIERID