Scaffold Ga0211507_1021977

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211507_1021977

Scaffold Ga0211507_1021977

Overview

Basic Information
Taxon OID	3300020325 Open in IMG/M
Scaffold ID	Ga0211507_1021977 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000034 (ERX556073-ERR598966)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1272
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_036
Coordinates	Lat. (^o)	20.8151	Long. (^o)	63.5046	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F059019	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211507_10219772	F059019	AGGAG	VKKFLEYMTIGNATVGTLCMVGAVGSIETDKWLQGGSMALLGIASYVLALYSQELYKEAK

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