NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211507_1006907

Scaffold Ga0211507_1006907


Overview

Basic Information
Taxon OID3300020325 Open in IMG/M
Scaffold IDGa0211507_1006907 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000034 (ERX556073-ERR598966)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2361
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_036
CoordinatesLat. (o)20.8151Long. (o)63.5046Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040347Metagenome / Metatranscriptome162N
F041247Metagenome / Metatranscriptome160N
F084452Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0211507_10069071F084452N/AMKVRDKEYPIRLGGPVDWQDKTMGDFVKEIDEQYQNNYFVAENGTSTTGVVGEIKDVNDKPITNKWNIRGEALVKRLQAMQKERPNLTILDMGCGVNEYKKHLNNVTGVDPYRKEADILCSQADFKPADDIKWDVIICFGPQNWYTYDEQYRNFMTLKNCLAPSGILLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAQKNSAFYFYDRNWKYTWYFNWTEHAVSTLADHVGLKINKVDYDHCNLYRPPMYRIFTEMTHV
Ga0211507_10069073F041247AGGAGVSDFYSVEAKTLKFDKEMLVDFYNTIDQSKWVHRQDKLPQYWPIDENNTFDRTHEFYKQLQRNINVDIDEDRIYFSRVHPGGIPNHWDFENFTKLQFPVICDEPDDDWSKTPILFIDQFDQIVERVEHTNNTPIIYSANYMHGTAKSLKNKNDRITLVVDLKFWFERVKIKYYEGTLFTNNKAFWSMA
Ga0211507_10069074F040347GGAGMNRWDITVKQSNYDFNPFRESDHGKYFKTVTNIYEDWSKELEYANKQQYDFYWPSPVKPDGDHFDYEYENKLVEDWGIPKDFVIYRMWTATKKECPILCGLADKLGLEDAQVNIQTQTTGMMLHLHIDSLTGLRKERKDQS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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