Scaffold Ga0211673_1001293

Overview

Basic Information

• Taxon OID: 3300020323
• Scaffold ID: Ga0211673_1001293
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001027 (ERX555979-ERR599120)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7498
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (95.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_098
• Coordinates
  • Lat. (^o): -25.8126
  • Long. (^o): -111.7386
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004819	Metagenome / Metatranscriptome	422	Y
F062840	Metagenome / Metatranscriptome	130	N
F078816	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211673_100129322	F078816	AGGAG	LTSKTIYVMEGIYRNKRIENTTFKLVKGYQPYPHKEGGFVTVHIDDMAKYQAPA
Ga0211673_10012935	F004819	AGGAGG	MEFYPREQDPRLDERSARFHARVLKEDLATLPFVLNTCNRDINIARASTYVSWDHDKEMWCEVDHLLMNFYVQARTSETRAELEDKINRGVVELLKGPRYYEQAKVYCTIDMDYPEDESIYDIVKIPKKKRKKAGWGITGDEGDIVYHVTLHVQECNNMDLTIYDNPNRGDFFDLNGDNLESPMKDLERIVNGG
Ga0211673_10012938	F062840	N/A	MYNKFKKGLIGNNAYLNWKTYIKKVASVYAYRRVDNTMDDTTETNLANKYAKALVKDMDKHKQLKGVLYVRLGMSILKQANG