Scaffold Ga0211560_1007644

Overview

Basic Information

• Taxon OID: 3300020321
• Scaffold ID: Ga0211560_1007644
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100002003 (ERX556042-ERR599060)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3052
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_138
• Coordinates
  • Lat. (^o): 6.3929
  • Long. (^o): -103.0691
  • Depth (m): 450

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013774	Metagenome / Metatranscriptome	268	Y
F029469	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211560_10076443	F013774	AGG	VLDDKLLELQRKKLQRQILYLRSELEETQMIFQECLGDFDSEFGKYFKDNINKKNKNESMDPVEFDIPEKDVNIVFRMIAQKTHPDKLVKEDTSSSSYKAKVEMYKEAQRSVKNKDWSRVVEIAMELDIDISDVKNDDSEYLVESVKKLMNKINQLKGTYAWKWGNTPDQEREVVKKMILQSLGLAVSVDDIMKEKENGK
Ga0211560_10076444	F029469	AGGAG	MSNKPEHTSYFIEIIRRLKEMEVEFRKTPNQPDDKVYGEMDGKIELMELPFPPEMFDRLSSDEKETLYIWLNRRNMPQA