Scaffold Ga0211517_1056408

Overview

Basic Information

• Taxon OID: 3300020319
• Scaffold ID: Ga0211517_1056408
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX556039-ERR599073)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 772
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Kanaloavirus → unclassified Kanaloavirus → Kanaloavirus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_018
• Coordinates
  • Lat. (^o): 35.7593
  • Long. (^o): 14.3453
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001419	Metagenome / Metatranscriptome	698	Y
F002883	Metagenome / Metatranscriptome	523	Y
F008624	Metagenome / Metatranscriptome	330	Y
F014748	Metagenome / Metatranscriptome	260	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211517_10564082	F001419	GGAGG	MYEFDGYDEILKCYEGVTDQHASTSFEVGLMNDLYYQLFREDF
Ga0211517_10564083	F014748	AGGAG	VNIGDRVQTLNTLCPITGQIVDMYKNRVTIADDDAETTDDLLSFHADELEVI
Ga0211517_10564084	F002883	AGG	MSTLHHEDMLLEIFDEVCEAFPYYDEEKQIEIANNKFQELCQ
Ga0211517_10564085	F008624	N/A	NMTRKSTDELNAIVKALSKLSLLNTTEEDQRLFDAQQELRRRKKEQDFIDAHFQVITYS