Scaffold Ga0211517_1007145

Overview

Basic Information

• Taxon OID: 3300020319
• Scaffold ID: Ga0211517_1007145
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX556039-ERR599073)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2325
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_018
• Coordinates
  • Lat. (^o): 35.7593
  • Long. (^o): 14.3453
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005533	Metagenome / Metatranscriptome	397	Y
F011578	Metagenome	289	N
F021120	Metagenome / Metatranscriptome	220	N
F049702	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211517_100714510	F049702	GAGG	MTLIDFNKKELHDIYSALSYTRLETGFENESEVELYDRLTKLMDKVAKLRQVCNCQEDKK
Ga0211517_100714511	F011578	AGGAGG	MITAFITGVVVAIPTSLITMKLLNSSLFISNTELKEANARISLIINNLDDFREERMKDKMERLGITDKLDPRL
Ga0211517_10071452	F021120	GGAG	MKVFTIQFTEDELTELENVLDQHVYAEVIETKGGEGIIGKVHNRILDVHYQNSDGIVPVDKVAPLHFRKDLDLL
Ga0211517_10071455	F005533	AGG	MSYTHNETQLLTLISNINNQFYYIGEDDDKVAPIDVKKFTEYCVAFIDSLEIEK