Scaffold Ga0211517_1005873

Overview

Basic Information

• Taxon OID: 3300020319
• Scaffold ID: Ga0211517_1005873
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX556039-ERR599073)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2564
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_018
• Coordinates
  • Lat. (^o): 35.7593
  • Long. (^o): 14.3453
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012403	Metagenome / Metatranscriptome	281	Y
F017755	Metagenome / Metatranscriptome	239	Y
F031294	Metagenome	183	N
F067120	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211517_10058733	F067120	AGGA	MQIKLENMKNQKTTKPEGKRDQWRSHNKRKQNVRRTARRNTQIAQEQSYG
Ga0211517_10058734	F012403	AGGAG	MRIRNTINPVAKALLQSDRRRSQIVPDKKKYNRKKDKQDANQAGKHEEPKDN
Ga0211517_10058738	F017755	GGAG	MAKRGAIIDMGRHKAVGSSWRSMDSMAYSRSYEPEFRPEFRCYVTGQADAMLEQYKKDVDKAEALAILAELL
Ga0211517_10058739	F031294	AGGAG	MKFEMLDLFLIAMLMVAIFFGLAMLSLHGIGYMTWLSWTMFGCSAWCLVCGWGIVAYNLENRNG