Scaffold Ga0211517_1002298

Overview

Basic Information

• Taxon OID: 3300020319
• Scaffold ID: Ga0211517_1002298
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX556039-ERR599073)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4088
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_018
• Coordinates
  • Lat. (^o): 35.7593
  • Long. (^o): 14.3453
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007002	Metagenome	360	N
F087292	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211517_10022983	F087292	AGAAGG	LEKETIEDEKGRVMNCQHYFKKLDKFGVCAFKADKGIIEIEPDSESCGIYHYVYYGSAKIGKPFSSDYKIVKKGDYFDMKDYLYEPRLYEALEDLYVFGFNVFKGDNWDSRLLKDETLKVDDESCLICLDGMPEVNGKKLGRFNYADLSTEKEYNINLNGGIIALYTKV
Ga0211517_10022985	F007002	N/A	MNDTYLTILNSYGDIVELDYQFDVPSIIDELKSVDKWIDGSNNKKGLTLTGSVNDLELTQRNDSNINDNLKKCPSLLGFFKLWNSLAKCHAVNMNTGSFFRLHRDAYKTTQQMRIFIPLNKTELHEFAFIYDKNIVELKAGRAYLLNTKKQHGSFAMVDAIYHILMGVYINPHNFKVVTNLLPNCIDHE