Scaffold Ga0211517_1000337

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211517_1000337

Scaffold Ga0211517_1000337

Overview

Basic Information
Taxon OID	3300020319 Open in IMG/M
Scaffold ID	Ga0211517_1000337 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX556039-ERR599073)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10277
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (64.29%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_018
Coordinates	Lat. (^o)	35.7593	Long. (^o)	14.3453	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074767	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211517_100033716	F074767	AGGAGG	MSNEGMENLEEIEKLQEEKVALYAEVKKYKNENEALQKQKIFLQNQCRKAGGAIFNQEKTIKGLKKEIDRLSEENTNLRTMLGDK

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