Scaffold Ga0211688_1007710

Overview

Basic Information

• Taxon OID: 3300020317
• Scaffold ID: Ga0211688_1007710
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2589
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1208
  • Long. (^o): -57.8265
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020600	Metagenome	223	N
F036433	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211688_10077103	F020600	AGGAG	MTNNTDLILSRTAKRLPADVLRPGQEADVGSMMLEYEREQAKRVRRQVLPVDRTYVRRQVNDDAIILLNEMRKAGPCTAKYLAEKMTISTHKSANLIKSLTSANLAEKICLTVRGHVQKGSSKYRTGARERNDCWVYQAVAQ
Ga0211688_10077105	F036433	AGG	MVKKKKKTKPLNEARSRADHGTPEAMRQADGVQFETVDGGRLGSVKRAYISRQTPMDRYKARGLVNQRQYDAAHAFFVLYDKTRQAGRVTSNYDRIIVDGSGGGGINEYAFSDYIALSQKLGIDYVSVVRAVVVECESAGDWAKRYRLPSRMGIEKLRDGLDKLAKIMGV