NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211688_1002847

Scaffold Ga0211688_1002847


Overview

Basic Information
Taxon OID3300020317 Open in IMG/M
Scaffold IDGa0211688_1002847 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4899
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1208Long. (o)-57.8265Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004606Metagenome / Metatranscriptome431Y
F008190Metagenome / Metatranscriptome337Y
F018962Metagenome / Metatranscriptome232Y
F056630Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0211688_10028472F056630N/AMQKDNIEETPQEEVQELKYYQWIKGDQSGSVVTIKEEDSNWITFNEGGRLATEFRSEFIQELDSDIAGEFVNTSNSTVDPLNQSATSVEPITKSDPIIPALDTTPSPIRVLFNKQKKNNKVKLLLEFPVNIPTKGVYELMSTSFDKEEVNEQLQSFILDQLSEDEILDCLHNSVQSLIESKYKGE
Ga0211688_10028474F018962N/AMIKIVLEPARNGVIKKVIDDNHGGGKEHFTSTDVYEANENDKNQYSYVKRFFFDLCDDLGLEIGSKFDKTVLDINTQWGTHYEPTDKDIEFKIKRLKSELKKLEEWKNI
Ga0211688_10028475F008190N/AMEEHIEFNFIYSSDALRVKTFLGNVPRSIECINYMDIFNKLTKNDFYQYEPSDAVVSSYLMRQLQNAIGRNISTTIFYVLGNLNKETVGGIQTYVESLSDKPITYKIYHSPDITVNGTAELFDDIIEFE
Ga0211688_10028476F004606N/AMKTHRIFNKGQNVYCLLASHTNPNILLPVKGKILDSKWDPVNPLYQIRIIKFYDNMRFLKQHFFDMNFRHMFENRARKMILKAEDFKTAKVLEDRLNEKDRERFYVVIESVMCTKTKVGLSELFEKVQLYMISKNLKEIRDISSRPFFKGPLSIDSVREFDARYKIGWADKFEKSSLSIDKYLNSLG
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