Scaffold Ga0211688_1000987

Overview

Basic Information

• Taxon OID: 3300020317
• Scaffold ID: Ga0211688_1000987
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10442
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1208
  • Long. (^o): -57.8265
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004370	Metagenome / Metatranscriptome	441	Y
F012239	Metagenome	282	Y
F052947	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211688_100098710	F004370	N/A	MYKVRKINFGWYKRRYGILLENLPPLKQKLLLNNRHMKWLNSDTQAFEVIFKVEDMNGHEKNVNKAIWNPFRETFTTLKELEKDADLISWNCGICKVPIKSRMDSKKVENFVCSKCSKAHNSRNRSVDGRIIDTSIRFTKHCKHLLKKEQREFMTYAKRSSKA
Ga0211688_10009873	F012239	GAG	MLIDNKFELEIPTHIAFTLYKNDYIDNLIISKVKKECKNKSKKDNEFIVSLDGFRNAITKSAFLRAELKKTLDQDMLPNPNFKPNSIFFLQSIINRLPNLNTITFKISDEKVFSRLVKVDGGREIVSFHFNIIEGTFDLTQILDREQLDTFNKRFMDVGIMKNKYLERSSYFYIKAQTLFDILSDMDEAQVLDAFEIITSVDPKIEEDDPILLVKTDYTPY
Ga0211688_10009877	F052947	N/A	MRAQFLKALIKKFPNYMELGGAVKRYHDLRQTKLTKEECEEIVLGSSFSIN