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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020317 Open in IMG/M |
| Scaffold ID | Ga0211688_1000494 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17915 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (20.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_082 | |||||||
| Coordinates | Lat. (o) | -47.1208 | Long. (o) | -57.8265 | Alt. (m) | Depth (m) | 40 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017335 | Metagenome / Metatranscriptome | 241 | Y |
| F022460 | Metagenome / Metatranscriptome | 214 | Y |
| F048317 | Metagenome / Metatranscriptome | 148 | Y |
| F105240 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211688_100049410 | F048317 | N/A | MIRDIYSRDALAPKFNDNTLEVSDKLSQLILKIENCLFTNKGDVLGAPGMGTNLDELIFSLVLSANTIENNINSQITAYCLPDIAGFSVDTKVSFFSTLERDGCLVDIFVNEQRVIGALF |
| Ga0211688_100049412 | F022460 | AGGAG | MATVKNNRTGFPSLYRATYENGWDLKNTGYKYGPDLLKNSMSSYMFRNRHLSKFLTDYLNPIMVFYINRVKYLRIYFNFAVPKWYQKIN |
| Ga0211688_100049414 | F105240 | N/A | MAISVTEILGTDSLSGSRLVINDNFNVLASEINAMETYFAPTAGTITNLNNLSTEALRVGLSTILLDINASTFDILTNVKMTGNLNLNGGAIFRNDTNPTPLNDTTAGAGMAINVGNSTAIPPYSINRCGNTDLTNTLALTLYSGSIGQEIFFICTEGSGSVQIQGISSNLVTTGTNDYITLNAVGESVHLLAIDNGLSVPVWFIVGGQGYVLS |
| Ga0211688_10004942 | F017335 | N/A | MNIKSLTLKNKLTDDKTGEQYYDLTAPSFKYKRELGVKALHYVTQDQVGRIDKISTVYFGSTKFVDAICVINNIFNPFSLQEGDILAIPQLNDENLVYARPKTATRPSASLAQYVDTGRQSEIDQSRIQRLIQKAKTKKTGVKAPIPPNMLQQGQAAKVFEGGKIKLGANLPSRNSPNIN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |