NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211688_1000493

Scaffold Ga0211688_1000493


Overview

Basic Information
Taxon OID3300020317 Open in IMG/M
Scaffold IDGa0211688_1000493 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17952
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_082
CoordinatesLat. (o)-47.1208Long. (o)-57.8265Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016325Metagenome / Metatranscriptome248Y
F081779Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0211688_100049311F081779N/AMSKEEIKYIVFAEDSTAMMQESLIQQSNPLTKERAIEFAERIKDRDNLFCVTIMKRVSQEELNQNKDE
Ga0211688_10004932F016325N/AMKISISKVDSNNFIGFVNRLKVIDSFVYFKLKDGVVQASAYLPQRDAVKHHRTPISQVFQIEDGEISTDKELKIAFFDASKITDAFKQFDYDAISAEIEFVENEEDCVATTFKIFNDELEITLACSEPSLGYKDLTDAQIQGIFNTEASTFKFDLDYTSLAKVRNLFALDKEETFSINANGNGVKLLGKTYNMLVTPDYDGEQGTNVTLFKKYLNLLDKEDYTAHVLDNRVVLRSNDSETLLTIATCQTAE
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