Scaffold Ga0211688_1000243

Overview

Basic Information

• Taxon OID: 3300020317
• Scaffold ID: Ga0211688_1000243
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000767 (ERX555998-ERR599027)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28882
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (61.70%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_082
• Coordinates
  • Lat. (^o): -47.1208
  • Long. (^o): -57.8265
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004343	Metagenome / Metatranscriptome	442	Y
F057353	Metagenome	136	N
F058118	Metagenome	135	N
F093726	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211688_100024329	F058118	AGGA	MAIKLYNLEVLVDDLVYVGSEIRAKSQEEAIKILGIISGGEVTEDSEILSCEEKTLH
Ga0211688_100024336	F057353	AGGAG	MSVTHYNFRKPKINRQEHESINKIFTHPHFNALINPKALDVLTELGISAKQFQDIINKNKSILTSYKNKRIK
Ga0211688_100024338	F004343	GAGG	MTQHKEMIDEARMLLKTKMDNTPSMSGDFSKDYWLLTYPCGKIVKTYEDKRKNDVVVQESYT
Ga0211688_100024339	F093726	GGAG	MTYEIAEYKYIGHMRSVYGLTRDLEYPSRKHSKQDSEGNWLLISYNGKKMGKVLTNGKVI