NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211589_1087514

Scaffold Ga0211589_1087514


Overview

Basic Information
Taxon OID3300020315 Open in IMG/M
Scaffold IDGa0211589_1087514 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000405 (ERX555948-ERR598972)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)551
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_064
CoordinatesLat. (o)-29.5123Long. (o)37.8586Alt. (m)Depth (m)65
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033076Metagenome178Y
F074983Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0211589_10875142F074983GAGGMSISLERNVQILSEHYVNRFKHLIDTNRREDAYSIGQEYVCKGEVEADDYQWFYVNYQFKLQEEK
Ga0211589_10875143F033076AGGAGGMNYNEIRRLYDNVDNDELVTQTAYEFKLFDDYYYQLFHSYSELDKGSN

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