Scaffold Ga0211589_1012558

Overview

Basic Information

• Taxon OID: 3300020315
• Scaffold ID: Ga0211589_1012558
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000405 (ERX555948-ERR598972)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1821
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_064
• Coordinates
  • Lat. (^o): -29.5123
  • Long. (^o): 37.8586
  • Depth (m): 65

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004453	Metagenome	437	Y
F014388	Metagenome / Metatranscriptome	263	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211589_10125582	F001993	N/A	MGLLSLTSEELRYKMKHLGVLCPNRSVANDEQFHELYSKFRDLIEDTEYDIDIVDCLTALHCAMEDFEMYA
Ga0211589_10125583	F014388	AGGAG	MSSLHHENILEDCFEVAMESFRINNKLTHEQLDELITISKGTYDAICNNAYKLFQDRCI
Ga0211589_10125584	F004453	N/A	MDMYTQIFFIMLIDFTEYELETIANAMEDYIQYDDEKLDTDLLFGGLSVADRVTSINNKIDSILYN