NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211522_1041884

Scaffold Ga0211522_1041884


Overview

Basic Information
Taxon OID3300020314 Open in IMG/M
Scaffold IDGa0211522_1041884 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000035 (ERX556135-ERR598974)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)811
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Zobellviridae → Cobavirinae → Siovirus → Celeribacter virus P12053L → Celeribacter phage P12053L(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_036
CoordinatesLat. (o)20.8199Long. (o)63.5138Alt. (m)Depth (m)17
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052611Metagenome / Metatranscriptome142N

Sequences

Protein IDFamilyRBSSequence
Ga0211522_10418842F052611GGAMIDIETDTVNQRCVIKSDKMLSEIYVEKEDSGYIFFRVTFEKGKVPQELSGRYSSLEKGKQAVESYLRDKVKTKTLQRNEYADKREIERNGSKSKSKGS

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