Scaffold Ga0211522_1009155

Overview

Basic Information

• Taxon OID: 3300020314
• Scaffold ID: Ga0211522_1009155
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556135-ERR598974)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2110
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_036
• Coordinates
  • Lat. (^o): 20.8199
  • Long. (^o): 63.5138
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020003	Metagenome	226	Y
F063605	Metagenome	129	Y
F075989	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211522_10091553	F020003	GGA	MSTKLNGNRYSPEGSRVPTDLLPTAIRYEAARAVIFEQQGNFVRANDCLRLKRYYERRAMEECIDAS
Ga0211522_10091554	F075989	GAGG	MTEHFMPIRESDYKKVDRALEILKGVISREEKRHPMDQELTDSMRMLLEDEIIPQLENELDFDPTPQYLWDDTGGEPPVTLDEMHTDAYNRKYNR
Ga0211522_10091556	F063605	N/A	MTIRYDNIDDLLPSEYQEPWPPLSDEEIEERQRQAEWEDYLASIPDAAERNRNLK