Scaffold Ga0211522

Basic Information
Taxon OID	3300020314 Open in IMG/M
Scaffold ID	Ga0211522_1002609 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556135-ERR598974)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020314 Open in IMG/M

Scaffold ID

Ga0211522_1002609 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556135-ERR598974)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4837
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4837

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_036
Coordinates	Lat. (^o)	20.8199	Long. (^o)	63.5138	Alt. (m)	Depth (m)	17
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_036

Coordinates

Lat. (^o)

20.8199

Long. (^o)

63.5138

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040347	Metagenome / Metatranscriptome	162	N
F041247	Metagenome / Metatranscriptome	160	N
F061913	Metagenome / Metatranscriptome	131	N
F084452	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211522_10026091	F040347	GGAG	MNRWDITVKQSNYDFNPFRESDHGKYFKTVANIYEDWSKELEYANKQQYDFYWPSPVKPDGDHFDYEYENKLVEDWGIPKDFVIYRMWTATKKECPILCGLADKLGLEDAQVNIQTQTTGMMLHLHIDSLTGLRKERKDQSSSRATDPEWGRVFVMLEDWKPGHIIQFGNTYVPPWKAGDVVWFDWA
Ga0211522_10026092	F041247	AGGAG	VSDFYSVEAKTLKFDKEMLVDFYNTIDQSKWVHRQDKLPQYWPIDENNTFDRTHEFYKQLQRNINVDIDEDRIYFSRVHPGGIPNHWDFENFTKLQFPVICDEPDDDWSKTPILFIDQFDQIVERVEHTNNTPIIYSANYMHGTAKSLKNKNDRITLVVDIKFWFERVKIKYYEGTLFTNNKAFWSMA
Ga0211522_10026093	F061913	GGAG	MFEQGNFYVKCHNIYYNQQWLRDVLDSLKPSDWVDGTSVTGVTWTVNECRNIPYENMWKDIVENSTLDFVGSSERGVEKKKPWCFFSKLPPGGINLHYDHRRWGAVLFPVKGKFHLTPQIFATENYTEIERFNFEKSKIHNNGTPVFFDSRVLHAVPTPIDDDEERVVFSVNIHTHPTEMYKRAIDGTWLNKNTKNIGVSSE
Ga0211522_10026094	F084452	GGAG	MINKLIWNKVEEMFYWNISVDSPINQLPFTMEFILACQKEFSMKVRDKEYPIHLGGIMDWHDKTMGDFVKEIDKQYQHNYFVAENGTSTTGVVGEIKDVNDKPITNKWNIRGDALVKRLQAMQKERPNLTILDMGCGVNEYKKHLNNVTGVDPYRKEADILCSQADFKPADDIKWDVIICFGPQNWYTYDEQYRNFMTLKNCLAPSGILLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAQKNSAFYFYDRNWKYTWYFNWTEHAVSTLADHVGLKINKVDYDHCNLYRPPMYRIFTEMTH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211522_1002609

Overview

Ecosystem & Geography

Associated Families

Sequences