Scaffold Ga0211485_1003838

Overview

Basic Information

• Taxon OID: 3300020313
• Scaffold ID: Ga0211485_1003838
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001037 (ERX556055-ERR599061)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3410
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_032
• Coordinates
  • Lat. (^o): 23.4217
  • Long. (^o): 37.2517
  • Depth (m): 80

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024570	Metagenome	205	Y
F029112	Metagenome	189	Y
F079193	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211485_10038381	F029112	AGGA	MSKTRNYPTNHVSYENVGAVTNHEEGTCTFELDTIPKKGLRTIDLFQGDERLFSISISDTGVCYQVLSAGEARGCFTLWEDEV
Ga0211485_10038383	F024570	AGGA	MNYVAYEIRLTKETPTGMRYMVRCNRTGKYAITTWVGSTGSSMGTVECQGKYDYVMRKWRKIVGKYVPVT
Ga0211485_10038389	F079193	AGGA	MKTEAVKNIFNAENYGLEDHSLWVDKISELDPEGNVVLVKLIAYVIDPIGNAMVFNYSPYAKLSELLNSAKVWIQCGCPSDCDASGFPRKWDEASLHEWVAS