Scaffold Ga0211542_1009273

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211542_1009273

Scaffold Ga0211542_1009273

Overview

Basic Information
Taxon OID	3300020312 Open in IMG/M
Scaffold ID	Ga0211542_1009273 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2444
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_041
Coordinates	Lat. (^o)	14.5375	Long. (^o)	70.0244	Alt. (m)		Depth (m)	60
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070008	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211542_10092737	F070008	AGGA	MKNAVITMLGCLICFGGGLYLGVSKVDEQADKWDVRYKEIDDKVSVFVDVSNPKTIRLYTNELRSILDNMGRLSKIVDKGQEIDETLDRILEGIVELEAQWDVTISNDLKMKETIDIINNHIVDTDSRVRSDLKVVLNKELEDIDLRINKQFDQIENDLRDIRNMLTQIENSKVGQKIFK

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