NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211542_1005008

Scaffold Ga0211542_1005008


Overview

Basic Information
Taxon OID3300020312 Open in IMG/M
Scaffold IDGa0211542_1005008 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3860
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_041
CoordinatesLat. (o)14.5375Long. (o)70.0244Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002747Metagenome / Metatranscriptome533Y
F059330Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0211542_10050081F002747AGGMAKRYFVNACIEIYVPEQGWGPKSTKNEDLDAQWFANVVASQIPKAINKNFRFSERDYSVNDVMVGKIEK
Ga0211542_10050083F059330N/AMTDKQIIEQTKDWLWELTEPREEFSGFGICPFLKKELTDDDMKFVILRGQDDSYGPDFKKGLDDWIEENKYNSILFICLGEIWEHIERKDYQLKLQKLMKENGYEDYKALCFSPYEDRTAAGVKTRAGSPYFLINIMSSTDLGKAHQSIVKTKYFDNFTKQELIDIKIYGKNTKKALDINKNN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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