Scaffold Ga0211542_1004630

Overview

Basic Information

• Taxon OID: 3300020312
• Scaffold ID: Ga0211542_1004630
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4091
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5375
  • Long. (^o): 70.0244
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013897	Metagenome / Metatranscriptome	267	Y
F029784	Metagenome / Metatranscriptome	187	N
F036278	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211542_10046304	F013897	GAGG	MSFTKDQLLALMNTIDFATDNDASYEEYTIIKSGTSDLESIRDILYNEYIHQT
Ga0211542_10046307	F036278	AGGAG	MSDPKGYTPEGVKYTFPDDDPYQEGNEIYYNMVDFLDDSEVHQIWEIVGKALDRNNIVTTDNESLSVRVYDELSEED
Ga0211542_10046309	F029784	AGGAGG	MCSQIYSHPVEGYKCFANANKSQGTYYTCCDLDTREIRYVTYIYDGYFMGYYLVQSPTKVTENYANCQGKIFLSSASNKWPYYKGNDDEYTIDRQYPMQYDIPSLDEVEYSYLDSLLTAGTSK