Scaffold Ga0211542_1002028

Overview

Basic Information

• Taxon OID: 3300020312
• Scaffold ID: Ga0211542_1002028
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX556125-ERR598977)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7280
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_041
• Coordinates
  • Lat. (^o): 14.5375
  • Long. (^o): 70.0244
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F003020	Metagenome / Metatranscriptome	513	Y
F047731	Metagenome	149	Y
F090847	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211542_100202811	F000720	GAGG	MTLIKENNKVRTELPNRMRSTTFTLPVDDRKVIGIVNYTVNSDGIHPEALWVKIKPTDSYLDRELRASGKLVSRLMQHGESLKDIVDTLSQDNIIGHMVNYFSKNMEDIIMGVPMDKKQRMLSTDPYAMKE
Ga0211542_100202814	F090847	GGAG	MIDEFEIEWIPEDTGAPYTEVDMTEPSFSEIPAHTVDKICKKKFGHTNWARLSQMSPTDLIGNPSEIDYVEGIIYFKHKTLV
Ga0211542_10020285	F047731	AGGAG	VTYTDRDPVEITLGVCESCSAYVPFIRLVTGDEKRIYQCLTCKARHTQHINGKVTFNYLEDGYTIKRH
Ga0211542_10020286	F003020	AGGAG	MPDISRFKSVSVSTDTHQKLTNMAAKKFGVAVSVQKVIDYLIEKELKKKNGRSNGKARR